1992, Loft, Hybrid 3
(Stefan Keune Trio with Hans Schneider and Paul Lytton)

2000, Excerpts & Offerings,
Acta 14 (with John Russell)

2000, SoloSchichten,
NUR/NICHT/NUR 1000317. Achtmal.1

2001, Deluxe improvisation series vol. 2 (Quartet track with John Russell, Brett Larner, Masahiko Okura on compilation CD)

2002, Frequency of use,
NURNICHTNUR BERSLTON 102 12 31 (with John Russell)

2003, Freedom of the city 2003,
Emanem 4212 (with John Russell)

2004, Freedom of the city 2004, Emanem 4215 (Quaqua, with Phil Minton, John Russell, Phil Wachsmann and Georg Wolf)

2005, Sunday Sundaes, Creative Sources Records 030 (Stefan Keune Solo)

2006, Analekta, Emanem 4138 (Quaqua with John Russell, Nicole Legros, Jean-Michel van Schouwburg, Phil Wachsmann, Jarvier Carmona, Ashley Wales, Ivor Kallin and Steve Beresford)

2007, The long and the short of it, Creative Sources Records 091 (with Hans Schneider and Achim Krämer)

2008, No Comment, FMP CD 133 (with Hans Schneider and Achim Krämer)

2015, Fractions, NoBusiness LP83 (with Dominic Lash and Steve Noble)

2016, Live 2013, FMR CD407-0116, (with Paul Lovens)